#Thebrain 9 manual how to#
#Thebrain 9 manual manual#

Segment data using defaults (use Segment Longitudinal Data for longitudinal data).The guide concludes with additional information about spaces after registration, naming conventions used and other hints.Only the changes are described here - steps such as quality control or smoothing are the same as those described in the basic analysis and are not repeated a second time.

Relevant changes to a basic VBM analysis are described here and how these changes can be applied. These cases are longitudinal studies and studies in children or special patient populations. There are some specific cases of VBM analyses, for which the basic analysis workflow has to be adapted.This description should provide all the information necessary to successfully analyze most studies. This is followed by a detailed description of a basic VBM analysis that guides the user step-by-step through the entire process - from preprocessing to contrast selection.Also, a brief overview of the steps of a VBM analysis is given. This section provides information about downloading and installing the software and starting the Toolbox.

#Thebrain 9 manual how to#

Naturally, a quick guide of how to get started is given at the beginning.

#Thebrain 9 manual manual#

The manual can be divided into four main sections:

Although it mainly focuses on voxel-based morphometry (VBM) other variants of computational analysis such as deformation-based morphometry (DBM), surface-based morphometry (SBM), and region of interest (ROI) morphometric analysis are also presented and can be applied with few changes. This manual is intended to help any user to perform a computational anatomy analysis using the CAT12 Toolbox. Importantly, CAT includes various quality control options and covers the entire analysis workflow, from cross-sectional or longitudinal data processing, to the statistical analysis, and visualization of results. The available analysis streams allow for voxel-based, surface-based, as well as region-based morphometric analyses. CAT is suitable for beginners, casual users, experts, and developers alike providing a comprehensive set of analysis options, workflows, and integrated pipelines. CAT12 is a powerful suite of tools for morphometric analyses with an intuitive graphical user interface, but also usable as a shell script.